Basic Information
VIS ID
TVIS42000169
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
61978
Orient
+
Integrated sequence
ATCTCTGCCGCCATCCCGGCCAGGAAGGCCTCGATGACCGAGTCTGGGACGCCGTAAGTCTGGTCCCAGAGCAGGGCCTCGTACACATAGTCGTAAAAGA| |GGGCCCCTGAGGGCTCCAAAAGCCGGAGCCGGGCGGCGTCAAAGGCCAGGACGGGCACAGCCGCGACGGGGGGCGTTTGTCCCCCGCTGGCCTCCGCGTA
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
239119256/238210615 (Hg38)
End
239119256/238210615 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2J
Nearest miRNA
hsa-mir-10b/Upstream/699627; hsa-mir-149/Downstream/858202;
Nearest TSS
ENST00000437798/Upstream/6886; ENST00000637634/Downstream/29056;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/6737, chr2-CpG: 47/Downstream/20840
Upstream sequence
TCAAGGTTTGGTGttcattcattcattcattcaGCAAACACTGAGCACTGCCTCCGTGCCAGGCTATGATACACAGTGAGGTCCAAGGTCAGATGAGATG
Downstream sequence
agaatggtgggtagctattatggggaagtcagcgttccatatgatggggtttacatggctgagaaatttgagatttaagtctgtttgatgtggagtgtct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate