Basic Information
VIS ID
TVIS42000170
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
128674
Orient
-
Integrated sequence
AGAAGGAAACTGGAATGTACACACTGGTCAAGCTTTATTACCTGCTGCGCATCTAAAGGAAAAACATAACAATCTTGTGAACCAGAAAGATACCCAGAGC| |AAAAGCAATAAAGTACAGGATTATTGCCAAAACAACGTGTGCTCTTTCTTCATACAGGCCCGCAATTTCCATGACAGTCCCGTTGGTGGTCAGCAGCAGA
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
241148754/240209337 (Hg38)
End
241148754/240209337 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2J
Nearest miRNA
hsa-mir-10b/Upstream/266243; hsa-mir-149/Downstream/246664;
Nearest TSS
ENST00000437798/Upstream/64775; ENST00000426280/Downstream/46698;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/50820, chr2-CpG: 18/Downstream/36382
Nearby gene
LOC107985836(+2065) ;
Upstream sequence
atcatCACAAAAGGGATGCTTACTGACTATAGAAAATTTTTTAAAATAACAAGAAACCTTACCCATAACCCATTATAAACATGTTTGTCTTTTTTAGTTT
Downstream sequence
TGGCTGCAGGCTGGCTCTCTTGATCACCTCCATGGACTGAGGATGTCAGGAGCTGTTGGGACGTGTTGTGAATGGTGATTTCTGTCCCACGTCACTCCAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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