Basic Information
VIS ID
TVIS42000171
Fusion event
EBV-RTP5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10841
Orient
-
Integrated sequence
GCGAACAATTATTAGTAGCTACCAACAAGGGCCCCCAGATGCCCCCCACCAGTCACCCGGCCGTGTCCACTCACATATTCCACTCTTATTTTTAAATTAA| |TGTGTCCCAATTAGAAACCCAAGCGCAGAAATTAGTTGAGAGGCTAGTGTTTTAAACATGCACCCTAGGCCAGCCAGAGATAATGTCACAAGATTATCAA
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242813536/241871384 (Hg38)
End
242813536/241871384 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
RTP5
Nearest miRNA
hsa-mir-10b/Upstream/393402;
Nearest TSS
ENST00000437798/Upstream/1655; ENST00000416204/Downstream/27754;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/4918, chr2-CpG: 62/Downstream/1520
Upstream sequence
tccctagaacctgcattcctgccatcttatgctGCTCGCCTGCATAGAGTCAAATACTGAGCACCAGGCTCTTTTCTATAGTGAAATATCAGGTGCTTAA
Downstream sequence
GAAAAACTGCTGAGAGGAGGTTTGCTTTGCTTCTCAGTGCTCCACATGAGGGGGCTGCGGGCTAGTGCGCATGGGCCTGCTTTTGCCTGTGTGTGGCCGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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