VISDB Viral Integration Site DataBase

VIS ID

TVIS42000176

Fusion event

EBV-PMEPA1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

11160

Orient

-

Integrated sequence

GCGACGGATTATAGCCAATAAGAGAGCTCAAGACGCAGGGCTCGCAAAGTATAGTGGCCCCGTGGGACCTTAGAGGTGGAGCAACGTCTAAAGTGGTAAT| |AACACCAGGCGGGGCTGGGCAAAGGGGTCCTACGGGCGGGATTAATTACGCCTTGCTTACGCAAGCTCAGTTAATTCGCCCACGACTTGAAAAATGTAGC

Chromosome

chr20

Cytoband

q13.31

Reference genome

Start

End

56247107/57672051 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-654-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-410-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-369-3p ; hsa-mir-7161-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-4279 ; hsa-mir-1229-3p ; hsa-mir-6749-3p ; hsa-mir-6845-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6777-3p ; hsa-mir-4639-3p ; hsa-mir-4656 ; hsa-mir-3616-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-19a-3p ; hsa-mir-219a-1-3p ; hsa-mir-3126-5p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3909 ; hsa-mir-4438 ; hsa-mir-4712-3p ; hsa-mir-484 ; hsa-mir-571 ; hsa-mir-6755-3p ; hsa-mir-6852-3p ; hsa-mir-6873-5p ; hsa-mir-6875-5p ; hsa-mir-760

Nearest miRNA

hsa-mir-103a-2/Upstream/350460; hsa-mir-1-1/Downstream/1145564;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/7331, chr20-CpG: 30/Downstream/142

Upstream sequence

tgatttgtctaaggtcaTGTTATTTGTCAATTTATTTCCAAGACCAGTGTTTCTCCAAATAGAGATTAATGAAAAGAAGAAAGAAAAAAGAAGAAAAAGC

Downstream sequence

AAAATTAAATTGTTCATGATGACTTCTTCTAGATGAAGGGGCTATCCCTTTTACTTTTTTGTATTCGTAAATTGTTTGCATTTTTATAACAGGCATAACA