Basic Information
VIS ID
TVIS42000178
Fusion event
EBV-chr20 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
121107
Orient
+
Integrated sequence
TCAAATCCATCTTTATTGACAATTATCAAAAAACCACCTTATTTCCAAACTTTAATATTCTTCGTACCGGCGCCACCTCTTCAATTATATAGTGTCCGTA| |ATGGATGGGGGCGTGGGTCTGTTTGACAGACATAAACTCATCGATGAGTGCCCGGGAGGAGGCTGAGAGTGCGGGGAATGCCTCCTGCAGAAAGCTGCAG
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
57967349/59392294 (Hg38)
End
57967349/59392294 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/573981; hsa-mir-1-1/Downstream/916180;
Nearest TSS
ENST00000382410/Upstream/27521; ENST00000443747/Downstream/122897;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/91223, chr20-CpG: 31/Downstream/11452
Upstream sequence
GCCATGGCTGGCTCATCCCAGCGAGAGCTGGCAGCAGAATGGCCTGTAATTTTAGCTGTTTCTCTTCCCTAAAATTATTTCCCATCTGGAAATGGTTTCC
Downstream sequence
atgcagctactagaagaaaggctaatggatgccgagcCACCTCTGTGGCCCTTGTCACTCAAATACTAACAAGTTGCAgaagtaggtaccattacatgtt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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