Basic Information
VIS ID
TVIS42000179
Fusion event
EBV-ARFRP1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
5385
Orient
+
Integrated sequence
TCCCGGCGACCACCAGCTCTGTCATGCTGCGTGGCCTCCGGGGCTGCGTCCTGCCTTGTTGGGTGCAAGGCTCGTGCCTGGGCCTGCAATTTACTAACCT| |CGGGATGCCATATGTTTTGCAGAATGCCCACCAGATCGCCTGCCACTTCCACAGCAATGGCACGGATGCCTGGCGCTTTGCTATGAATTATCCAAGAAAC
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62336752/63705400 (Hg38)
End
62336752/63705400 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARFRP1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-1-1/Upstream/418534; hsa-mir-1914/Downstream/214049;
Nearest TSS
ENST00000382410/Upstream/4012; ENST00000431125/Downstream/653;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/8195, chr20-CpG: 180/Downstream/1907
Upstream sequence
TGATAATGGATGGATGCTGGCAATTATTGTGGGGCAGAAATAATGAAACTGGAATGGTAAATAAAATATGGATCCATTTTTATAGCAAAAATGAGGATAA
Downstream sequence
GGCAGGGAGCCCGAGGAAGCCACAGGCTCTGCCCTGCTCAGTGCTGGACTCAGTGCCTGGCCCAGGCTGAGAAGGAGATAAACTGCAGCCTTGGGGGTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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