Basic Information
VIS ID
TVIS42000180
Fusion event
EBV-chr20 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
110327
Orient
-
Integrated sequence
CGCCACACGAGGTCAGGCCCATGTCTAAGTTCAGGTTCCACATCTGCGACAGCACCTCCAACAGCACCACCTTTGGGGCTGCAAATTGCAAAAAGTAGAG| |CGGGTCGGATCGGTCAAATCCCATGTCAGGGTTGGGGTAGGGGATTTTGTGGGTGGAGTCAGCGAGGTGCATGATACCATAGAGCAGCGAGTAGCCGAGC
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62880536/64249183 (Hg38)
End
62880536/64249183 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-1/Upstream/172173;
Nearest TSS
ENST00000382410/Upstream/84571; ENST00000609297/Downstream/6512;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/61644, chr20-CpG: 85/Downstream/6152
Nearby gene
MYT1(-6930) ; PCMTD2(+6512) ;
Upstream sequence
AAGGTCTGCTGAATTATATTGCCTAAGCTGGAACTCTAGCACGTTCATTGATTCATTCAACAAACCTTTCAAAGGCCTCATATAGGCAGACTAATAGTCA
Downstream sequence
ACAAACATCACAGAAGTAAATTAAATGAGAAGTTGTGTCCTTAGCCAGAGCTGAGACATGCTaagaaattaaccttacatatttacccatggagtctcat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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