Basic Information
VIS ID
TVIS42000183
Fusion event
EBV-LOC100288151 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
54686
Orient
+
Integrated sequence
GGGGGTGGCGGGCCAAGCGTCCAGTCTGGCCAGAGGGCCGGTCTCGATATCCGTGAACCAGCCGGGTTCCGCGGCCTCCATTCTCTCCGCCGCACCACCA| |TCGTCCACGAGCAGGGATCGCAGTCTCTCCCTCCTCACCCTCGTTATTCCCAATAGCATAGCGGCAAGGATCTGTGTGAGGGAGTCCAAGATGTCCGTGT
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21112650/19740336 (Hg38)
End
21112650/19740336 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100288151
Nearest miRNA
hsa-let-7c/Upstream/1054172; hsa-mir-155/Downstream/3338948;
Nearest TSS
ENST00000624081/Upstream/438723; ENST00000486367/Downstream/159419;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1494779, chr21-CpG: 89/Downstream/1256769
Upstream sequence
TTGCAATAAATCACAGCCTTTTCCATACAGACATTTTTTGTATGTGGGACCATTATCCCTCTGGTAATATATTTTTAATATGCTATGACTGTAAAGTATT
Downstream sequence
AAATCAGTCTTGTTACTTGATAGTGATGCCCCAAGTATAGCTATTTGTATGTACTAAACACATCATTTTTGGTATATGTGTCTCTGTGTTTTTGGCTAGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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