Basic Information
VIS ID
TVIS42000184
Fusion event
EBV-LOC105372753 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
77496
Orient
-
Integrated sequence
GCTGGGAGGTAGATAGGTGGTCGCATTGTATCTCGGTCTTGGCGTAGTTGAATCACCGCCGTAATCTGTGGTGGGCTCTGTACTTGTCCGGGCTCCATGT| |CCTGTGGTGTGCTTTCCACCGGTGGTAGAATTGGCCTTTCCACCTGTTGAGGTGACCGTGGGAACCGCCGTCTTTTGGCCACTGGGGGCCTGGGGCGACG
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
26879468/25507156 (Hg38)
End
26879468/25507156 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372753
Nearest miRNA
hsa-let-7c/Upstream/2427764; hsa-mir-155/Downstream/66824;
Nearest TSS
ENST00000624081/Upstream/75455; ENST00000456917/Downstream/11182;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/144985, chr21-CpG: 51/Downstream/54955
Upstream sequence
AACCAATGGTAGAATGATTCACTATGTCAATAAATATTCTGAATCATAGAACAATGTAGAGGACGTGGCAGACAGCTGCTGAACATATTTAAACCTCATA
Downstream sequence
TTTCAGTTTAAAAAGGCACGTATCCTAAAGTGCATGTCAGTCTCTGGATAGCAAAATTACAGCGATGTAGTTTTCCTCACTTGAAATTTACATTTTAATG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate