VISDB Viral Integration Site DataBase

VIS ID

TVIS42000185

Fusion event

EBV-FTCD integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

110142

Orient

+

Integrated sequence

ACGTCGGCCATCTGGACCAAAGAAGTCGTCTGCCAAGAGTTCAGCTACCAGACCTGGAAGATGAGGGTGCTCAAACCGTGGGCGACAGTTGAAGAAGTAG| |CTCTCCTTGAACCTCTTTTTAAGGCTCCGGCACCACTGCAAGAATTGACTCATATGCTCCGCCGTGACATCCACGCACGGACTCTCGCCACACGAGGTCA

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

47576287/46156373 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-193b-5p ; hsa-mir-7155-5p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-668-3p ; hsa-mir-483-3p

Nearest miRNA

hsa-let-7c/Upstream/678047;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/9942, chr21-CpG: 153/Downstream/4205

Upstream sequence

GCATGGGGCAGGGGAAGCAAGCATGTGAGAGTGAGTGCAGATACATGTGAGCGCAGGGCAGGGGAACACGCGTGTGAGAGTGCAGATACACACGAGACGG

Downstream sequence

GCATGTGCGATATGGGGGAAGGCAGCTGAGACCCCAGCTCTCCCCAGCTGCTGCTCCCCTGACTACAGGCTCCCCACGAAGTCAGCGGCACCAGGGCCGT