Basic Information
VIS ID
TVIS42000188
Fusion event
EBV-chr22 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
9794
Orient
-
Integrated sequence
CACTCTGCAGTGCCTGGTGCTGCTTTACCTGGCACCTGAGTGTGGAGGTACAGACCAATGTGACAATTTTCCCCAAATGTTGAGGGACCTAAGAGATGCC| |TTCAGTCGTGTTAAAACCTTTTTCCAGACAAAGGACGAGGTAGATAACCTTTTGCTCAAGGAGTCTCTGCTAGAGGACTTTAAGGGCTACCTTGGATGCC
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
30945988/30550001 (Hg38)
End
30945988/30550001 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22B
Nearest miRNA
hsa-mir-1286/Upstream/542888; hsa-let-7a-3/Downstream/181556;
Nearest TSS
ENST00000624155/Upstream/3319; ENST00000423350/Downstream/7585;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/7343, chr22-CpG: 113/Downstream/4874
Nearby gene
SIRPAP1(-3284) ; GAL3ST1(+4634) ;
Upstream sequence
AGAGGCCAGGTGGGGATCCAGGCAAGGTGGAGAGGCTGGACCTAGCGCAGAGGTGGGGCGTAGAGAGTCtgttaatttcctggggctgtcataacaaagt
Downstream sequence
gccacaaactgctgggtggcttaaaacaacgggaaatgtatcctttcacaggtctggaggccggatgtctgaaatcaagggattggcggagctgggtttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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