Basic Information
VIS ID
TVIS42000189
Fusion event
EBV-BPIFC integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
120184
Orient
+
Integrated sequence
ACTTGTTCATCGACCATGGTACCCCCTTTATCTTAACCAGCAAGTGGCCGTCAGGGTCTCTTGAGAGTATGCCGCTGTGGCCAAGCGAGGCCCCAAATTA| |AATAGTGATGCCAAAGACTGTAGGTAGGTCATCATCACACGCATGCGTGATAAATCATCCGCCACTGACAGGTCATCCAGGTCTATCCGGGCTATCTCAT
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
32854327/32458340 (Hg38)
End
32854327/32458340 (Hg38)
Orient
+
Location type
Intronic
Target gene
BPIFC
Nearest miRNA
hsa-mir-1286/Upstream/836809; hsa-let-7a-3/Downstream/978242;
Nearest TSS
ENST00000624155/Upstream/954; ENST00000465418/Downstream/6109;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/46042, chr22-CpG: 84/Downstream/16223
Upstream sequence
actggctaacttgatctttctttaatgatctaagtagcctgtacaccaggatctttgtatttgctgtttcctcttcctggcatagtcttcctcaaagaac
Downstream sequence
ccggtcttgcacttcttcagataactcaaatgtcgtctcagcaaagtctttcctagccactcaatgcagaacatggacaccttccctgtggccctgttat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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