Basic Information
VIS ID
TVIS42000191
Fusion event
EBV-chr22 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79200
Orient
+
Integrated sequence
TATTGGGGTGGCCACGGGACTCGTTGATGTGAGAATTCCGCCGCTGGGAACATGGCTCTCGTATCCACTGCAGGTGATGTTAAATTTGTTGTCTCCGGGC| |AGAACTTGTGAAATTTCGCCATCCTCCATAATACACTCAATATCTATCTCATTACCGAGCATTTCTGTTTTTACGCTGAAATTCGAGTCTTGAGCTGACG
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
34850144/34454153 (Hg38)
End
34850144/34454153 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/1017484; hsa-let-7a-3/Downstream/881487;
Nearest TSS
ENST00000624155/Upstream/244891; ENST00000624442/Downstream/187026;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/531504, chr22-CpG: 76/Downstream/803215
Upstream sequence
tagtcaagtgcagtgggttagagcagcagcaaacaaatctcaaattttgtcatatgccttaacacaacaaaagagtatttcccacttttgtaatgtctgt
Downstream sequence
tgttagtgtgggcacctctccagagcagctgtcctccatgcggcggctccccatcccaggctggcttgatctatggcacctccatggcaacatgtggttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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