Basic Information
VIS ID
TVIS42000193
Fusion event
EBV-chr22 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36437
Orient
+
Integrated sequence
AGACACTCCATTAATTCCACTAACAATCTTTGTTGGGGAAAACACGGGGGTGCCCCCACCACTCCCACCACCCCCCCCACCACCACCCCCACCACCCCCA| |CCACCCCCACCACCCCCACCACCCCCACCACCTCCACCACCTTCACCACCACCCCCGCCCCCACCACCCCCACCACCTCAGCGCAGGGATGCCTGGACAC
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
42719908/42323902 (Hg38)
End
42719908/42323902 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1281/Upstream/400605; hsa-let-7a-3/Downstream/2877052;
Nearest TSS
ENST00000624155/Upstream/45714; ENST00000428765/Downstream/19714;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/33813, chr22-CpG: 22/Downstream/14549
Upstream sequence
taaatgggagagtgAGCTGTTGCGGTGGTCGCGGtggtggtagtggtgatggaggttatggtggtggtggtggtggtggtgatggaggttatggtggtgg
Downstream sequence
aggtggtggtggtgatggaggttatggtggtggtggtggtgatggaggttatggtggtggtggtgatggtggtggtggaggttatggtggtggaggtggt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate