Basic Information
VIS ID
TVIS42000194
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
89024
Orient
+
Integrated sequence
TTACAGTCAAGGTGCATTTACCCCACTGGACATTAATGCCACCACGCCAAAAAGGCCTCGAGTAGAAGAAAGTTCTCACGGACCTGCCCGGTGTTCCCAA| |GCTACTGCTGAAGCACAGGAGATTCTCAGTGACAATTCTGAGATCTCCGTGTTCCCAAAGGACGCGAAGCAGACTGACTACGATGCATCCACTGAAAGTG
Host Sequence
Chromosome
chr3
Cytoband
p25.3
Reference genome
End
9676966/9635282 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4790/Upstream/4385027; hsa-let-7g/Downstream/645069;
Upstream sequence
TAAATGCGGGCTCAGTGGACCACTGGTGACTGGGCTCATGCCTCCAAGTCAGAGTTTCCCTGGTGCCCCAGAGACAGGAGCACAAGTGGGATCTGACCTG
Downstream sequence
aacctggaaggcagaggttgcagtgagcccagaccatgcatggcactccagcctgggtgcagggtgagactcctcctcaaaaaaaaaaaagagacttagc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate