Basic Information
VIS ID
TVIS42000195
Fusion event
EBV-FGD5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129054
Orient
+
Integrated sequence
TGGCGGGGCTCCCCAGCCACAGCACCCTGCGAACATTTATTCATTATAACGGGGGAGAGAAAGAGAGAGCTGCTGAGATAGGTGGTGCTGGCCTCGTATA| |GCGCCGAGCCTCGGACCTCACGGTCACTAGAGATTATGAATGTCACATTGATGAGCGGGATAATCATCAGAACTTTGTCGAGCCTGTCCACGCATTTGTA
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
14933680/14892173 (Hg38)
End
14933680/14892173 (Hg38)
Orient
+
Location type
Intronic
Target gene
FGD5
Nearest miRNA
hsa-mir-12127/Upstream/4497611; hsa-let-7g/Downstream/604066;
Nearest TSS
ENST00000440867/Upstream/9868; ENST00000487605/Downstream/4789;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/80586, chr3-CpG: 156/Downstream/54932
Upstream sequence
agttccattacataggcatgcctgattcaatcactggccattctccagcccctatcccctcctcgaaggtgagacttggggagggctaaccatagggttg
Downstream sequence
ATCCTTATATACAAAAGACCttttttttttatttttttatttttttgagacagggtctagctctatcacccaggctggagtgtagtggcgctatcacaac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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