Basic Information
VIS ID
TVIS42000196
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
90951
Orient
-
Integrated sequence
AGTTTGGGTCCATCATCTTCAGCAAAGATAGCAAAGGTGGCCGGCAAGGTGCAATGTTTAGTGAGTTACCTGTCTAACATCTCCCCTTTAAAGCCAAGGC| |ACCAGCCTCCTCTGTGATGTCATGGTTTGGGACGTGCTAAATTTAGGTGTGTCTATGAGGTACATTAGCAATGCCTGTGGCTCATGCATAGTTTCTAAAA
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
16593250/16551743 (Hg38)
End
16593250/16551743 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/677894; hsa-let-7g/Downstream/381453;
Nearest TSS
ENST00000440867/Upstream/15423; ENST00000460467/Downstream/53047;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/37837, chr3-CpG: 102/Downstream/52698
Upstream sequence
ccttgtcaacaatgagttgtctgtaaattcatgaatttacttctgggttctgtattctgttccattggtctatgtgtctgtttttatgacaatatcagac
Downstream sequence
TCAGTCATGATGTAATAAAATCATGAGGCCCTACATATATTGTTTTTCTCCTTTTGGTATAAGCTTGGGTTTCAGAGCCATGTTTTTCGACGCCAGTAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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