Basic Information
VIS ID
TVIS42000197
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114166
Orient
-
Integrated sequence
CAGGGCCCCTTCTGCATACCAGGCACCACCCCGTCCCAGTGGGATGATCTCCGAGGGTGTGATATCTTGCAGTTCTTCTACTGTTTTAACGGCGGTTGAG| |GTGGTAAAGACGTGGGCCGTGGTCAGATCTGTGCAGGTGACTACAGGGTTACCCCTAATCTCCACAGGCACCGCCTCACCCACTGCATCTGAGAATACCC
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
29139803/29098312 (Hg38)
End
29139803/29098312 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3433373; hsa-let-7g/Downstream/2063392;
Nearest TSS
ENST00000440867/Upstream/233088; ENST00000471426/Downstream/182592;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/521833, chr3-CpG: 88/Downstream/1508183
Nearby gene
MESTP4(-8696) ;
Upstream sequence
AGGTAAAGGGTTTGGTATTAGGCAGATGCCAATTcaaatcacacctttatgcttctctgggcaaagttcttaatctgagtctaaactactgataaagcat
Downstream sequence
tatgctggttgtagtagcaatcaatgcactcaatgtatgagcaagttcactatctcctatggtttggaatggtagaggtctcttaaagcttatctcattc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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