Basic Information
VIS ID
TVIS42000198
Fusion event
EBV-LOC101928135 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64421
Orient
-
Integrated sequence
GCACCGGGATGAGCTGGAGACCCGAGTCTCTGCTTTCGCGCAGAGCCCGGCCTACGAGCGCATCGTCTCCAGCGGCTACCTGTCGGCCCTGCGCTACTAT| |GACACCTATCTGTATGTGGGGCGCAGCGGGAAGCAGGAGAGTGTGCAGCACTTTTACATGCGGTTAGCCGGCTTCTGTGCCTCAACCACCTGCCTCTACG
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
34953909/34912417 (Hg38)
End
34953909/34912417 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928135
Nearest miRNA
hsa-mir-12127/Upstream/2406028; hsa-let-7g/Downstream/832059;
Nearest TSS
ENST00000440867/Upstream/368537; ENST00000421492/Downstream/726528;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1113238, chr3-CpG: 86/Downstream/726600
Upstream sequence
AAATGTAGGAGGCCGAGATGGAATGGGGATATTTTTAATTATTGCACTTAGTTAGATAAACTGTTATCCCTTCTAAGCCTAGATTCCTGTAACCAAATTA
Downstream sequence
ggactatgtgcattaggccagttcctcatgtatcttacttgtgtcttcaggtactgcttgagcttttccatttggtaagggagtgctgctgtgcccaccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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