VISDB Viral Integration Site DataBase

VIS ID

TVIS42000200

Fusion event

EBV-TRAK1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

132154

Orient

+

Integrated sequence

CCCTCCTCAAAGCCTTTCTGGTACATGAAGCTCCGGCTCGTGGAGTCCGCACCTCCTTCTGTGCACGAAGTTTTGCGGAACCAGGAGAAGGGGTCTGGCG| |TCTTGCTGGGGCCACACTCCCGGCTACGGGGCTTCGGGGTAGGGGCAGTAGGCTTTTGGTGTGCGGGTGCTGGTGGCTGGGCTCCCCTGGGCAGGGTAAA

Chromosome

chr3

Cytoband

p22.1

Reference genome

Start

End

42246296/42204804 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-324-3p ; hsa-mir-93-5p ; hsa-mir-374b-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-711

Nearest miRNA

hsa-mir-12127/Upstream/3066538; hsa-let-7g/Downstream/1909408;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/1925, chr3-CpG: 33/Downstream/58648

Upstream sequence

GCTAAAACAAGGAAAGATAAAGGCAAAAGAAACCCAGCTCCTACATTCTTTTGACCAGTGCAGACCCAGTGTGAATAGTGCCGCACAGCCAAGAGATATT

Downstream sequence

ccattgccctcaagttacccttccacctcagcctcccaaagtgttaggattacaggcatgagtcaccacacctggcTCAGACTTCTTAGCTGTTACAACC