Basic Information
VIS ID
TVIS42000202
Fusion event
EBV-ERC2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
105209
Orient
-
Integrated sequence
AGCAACAGAAAGCTATTAGCCGGTGGTTCCCCCACCATCATTCTTCCTGTTAACGGGAAGAATAAGAGTTGGGCAAACCCCGGGGGCCGCGCTCTCCCAC| |CCAGCCCCGCTTCTCACCTGTGCTAGTGGCTCCTCTGAAGGATGGGCGGAGGTTGGTGCCACAAAGCCCAGGATGAACTCGTCTGCATAAGCCCAGGTCA
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
56149430/56115402 (Hg38)
End
56149430/56115402 (Hg38)
Orient
+
Location type
Intronic
Target gene
ERC2
Nearest miRNA
hsa-let-7g/Upstream/262808; hsa-mir-12124/Downstream/4502403;
Nearest TSS
ENST00000440867/Upstream/348603; ENST00000487739/Downstream/58108;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/627086, chr3-CpG: 93/Downstream/352438
Upstream sequence
GCTGTAGGTTTCCTACCACATTTTTTCGTGCTGGGTGTGGTCAACCACAGGCCCATGTGTTGGCTGTGGCCAAAGAGGCCCTTATCCCTTCCAGTAAGAG
Downstream sequence
gttcctctaggaaccagcccccattcttcaagagtcacgtcattaacataaactcaggtgtagttgaaaagggcttatcacaggtaacaaaggaagctac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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