VISDB Viral Integration Site DataBase

VIS ID

TVIS42000208

Fusion event

EBV-STXBP5L integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

153399

Orient

+

Integrated sequence

TATCAAAGAGGCACTGGAGGATGTTGGCCGCTCCTTGGAGCAGCTTGTCGAAATAATGATCCACGGCCACGGGAACGCCGTGCCGCTCGGCGTAGGCCGG| |GTCCTCGGCCATCTCCGTCTTTCTCGCCCCCTTCACTCCCCCCTTGGGCTCCACAAAGACGTACTGGATGCGGTCGTGGATCTGGGGCAGTTCCTCGTTG

Chromosome

chr3

Cytoband

q13.33

Reference genome

Start

End

121132967/121414120 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6083 ; hsa-mir-3692-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-5579-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-374c-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-1263 ; hsa-mir-150-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-660-3p ; hsa-mir-5193

Nearest miRNA

hsa-let-7g/Upstream/364405; hsa-mir-12124/Downstream/1747674;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/505401, chr3-CpG: 41/Downstream/131502

Upstream sequence

caggttcacaccattctcctgcctcagcctcctgagcagctgggactacaggcggcctccaccacacctggctaattttttgtatttttagtagagacgg

Downstream sequence

TATCATCACCATTGtcattctacagataattattgagtttttttctatatgcctaatacttggctagactctaggaacatgctaataaataagatacaag