VISDB Viral Integration Site DataBase

VIS ID

TVIS42000209

Fusion event

EBV-SLC12A8 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

158148

Orient

+

Integrated sequence

TTCGCCTTGCGGGTTCGTCCCTCGGTTGTCGTAGTCCACTATCTTGTAGTTAGTTCTCACGTGGAAGGAGTCTGCCCGCTCATGGAAGGTTTCCTTATTT| |TTCCCGTCATAGAAAGGGGACATTTCCACAGTCTGCCCGGTGGTGGTCACAAAGAAGTCGAAGGGGCTGTTGGACTTGGCCATCATGTCAGTTATCAGGC

Chromosome

chr3

Cytoband

q21.2

Reference genome

Start

End

124848006/125129162 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1227-3p ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-425-3p ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-4680-5p ; hsa-mir-550b-2-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-6828-5p

Nearest miRNA

hsa-let-7g/Upstream/396646; hsa-mir-12124/Downstream/22303;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/72977, chr3-CpG: 51/Downstream/12548

Upstream sequence

tccccttcctagtcaaagaaaggggtgacagatggcacctggaaaatcgggtcactcccaccctaatactgcgcttttccaacaggcttaaaaaatggcg

Downstream sequence

TTTAGAATCTGGGAACAAGGGTTACAGGACTTCACATGACTGATATTCTTTTCAGTGAATTTCCATTTCCTAGTTCCTCTGTGAATCGTGTTCCTGGATC