Basic Information
VIS ID
TVIS42000210
Fusion event
EBV-RPL32P3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
156423
Orient
-
Integrated sequence
GGCGGCGGTCTCTGGATCGTGATAGCGTCTTCTGCGTAGGCCTGGAAAACGGTCCCTGGCTGCCTGCAATGCTCTGCTGGCCACTGAGGGTCCGGCCGCC| |CTCTGAGCTGCTCTCTTTTGCTCCTGGTTTTGCTCATGCAGCGCTAACATGATGGCTTGTAATTCTGTCTTACTAATGGGATTAATGCCTGGACCCTCAC
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
129113952/129395109 (Hg38)
End
129113952/129395109 (Hg38)
Orient
+
Location type
Intronic
Target gene
RPL32P3
Nearest miRNA
hsa-let-7g/Upstream/122866; hsa-mir-1224/Downstream/2590746;
Nearest TSS
ENST00000440867/Upstream/76873; ENST00000504653/Downstream/23414;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/50819, chr3-CpG: 36/Downstream/33277
Upstream sequence
gaagcagcaaaaaggccaatgtggctgtagtggggcaaacaaatgggagagtgacaggaggtgagttaaaagagaaaatgagaccaaatggtgaacttct
Downstream sequence
ggtctcgatctcctgaccttgtgatccgcccacctcgccctcccaaaagtgctgggattacaggcgtgagcTTGCCTAGTTTTTTAAACCTGCTGTTCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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