Basic Information
VIS ID
TVIS42000211
Fusion event
EBV-IFT122 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
131248
Orient
-
Integrated sequence
GCACAGTAAACGGCGTGATATGCATCGTTGACACTCTTCAGGTAGCCAGCATCCAGTCCTGACTCATGTTTCCTCCCTCGCTTCTTCAGGCGGCGCATGT| |TCTCCTCCACGTTTAACTTCATCCAGACTATGGTGTCCCCCGGGTCTGCGGTAAACGTGGCCAAAACTTGAATAAAGTCACTATAGGAGAGAAGCTGGCT
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
129209428/129490585 (Hg38)
End
129209428/129490585 (Hg38)
Orient
+
Location type
Intronic
Target gene
IFT122
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7g/Upstream/218342; hsa-mir-1224/Downstream/2495270;
Nearest TSS
ENST00000440867/Upstream/2394; ENST00000513932/Downstream/4865;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49951, chr3-CpG: 262/Downstream/114487
Upstream sequence
cagcgacattagcagaggcacactaggtagcctgcacgccctcagctcccatccctgccctgcagtgacaagagcccctatcactcaggaggcaaaggcg
Downstream sequence
GAAAGACCCTTGAGAGGGTGTCAGTAGCAGGCCCCTTTCCACAAAGAAGATGGTTGGAGCCCAGAAGCAGAGAAGTAGGCTCAGAGCGAGGACTCAGACC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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