Basic Information
VIS ID
TVIS42000212
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
95243
Orient
+
Integrated sequence
GGCCAAGCAAAACCGCGGGGGCATGGGATCCTTGCACTTAGCCAAGCCTGAGGAAACCTCCCCCGCCGTCTCCCCAGTATGCCCCATCGCTTCCCCAGCG| |GCCTCCAGGTCCAAGCAGCACTGCGGGGTCACTGGATCCTCACAGGCCGCACCCAGCTTTTCTTCCGTTGCCCCAGTAGCATCTCTGTCTGGTGACCTTG
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
146741663/147023876 (Hg38)
End
146741663/147023876 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/12585970; hsa-mir-1224/Downstream/4542000;
Nearest TSS
ENST00000440867/Upstream/101913; ENST00000462168/Downstream/346780;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/479158, chr3-CpG: 39/Downstream/335452
Upstream sequence
AGTGATGCCAGGAGTAAGAGCTGTGAACCCGTCACCCatttattcattcaacaaatgcatactgagagcttattaagtgctagacattcatctagtgtct
Downstream sequence
acacaaataaatgataaatgtatgagatgatgaatattctagttaccttagctatataccatatgaattgaaacctcactatgtaccctattaatatgta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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