Basic Information
VIS ID
TVIS42000213
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
50251
Orient
+
Integrated sequence
GTGCGCTACCGGATGGCGGGTAATACATGCTATCCTTACATTTTGGCATTTTGGGCAGCTGGGAGGCGGCGGATGGGGGTGCTTCTTTTCGCACGGTGTA| |TGTTTGGGGACCCGCATGCCGGTACTGGGATAGGCGCACCTCGGGCCGCGCGCCAGGCTCCGAGCCGGAATGCATTGGGGGCAATGGGATTGCGGGGGAT
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
148512937/148795150 (Hg38)
End
148512937/148795150 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/14357244; hsa-mir-1224/Downstream/2770726;
Nearest TSS
ENST00000440867/Upstream/4048; ENST00000494888/Downstream/10510;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/97005, chr3-CpG: 102/Downstream/196139
Upstream sequence
CCCAAGGTTGGAGATATCTTGGTACTCACTTGTAAGTGGAGAAACACTAATAGGAAAATATTCTGGGAATCTGGTAAGGAAGTATGAGTGAATTTATCAT
Downstream sequence
CCTTCAGTTTTATCTATATTTGTTCTCTTTGAATTAGTCTTTTTTCATTATTATCTTGCAAAttctttcccttcttttccttcacttcatttcctttcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate