Basic Information
VIS ID
TVIS42000214
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
136342
Orient
+
Integrated sequence
AGCTAAGGCAATCGATGCTGGATTTCTGAGAAACCGCGTGGAGACTCTGAGGCAGGACAGGGGTGTGGCCAATATCCCAGCCGAGTCGTATTTAAAGGCC| |AGCGACGCCCCGGACCTACAAAAGCCGGACAAGGCACTTCAGAGCCCACCACCGGCCTCCACAGACCCAGCCACCATGCTATCAGGTAACGCAGGAGAAG
Host Sequence
Chromosome
chr3
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
152367379/152649590 (Hg38)
End
152367379/152649590 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/1083595; hsa-mir-1224/Downstream/6633056;
Nearest TSS
ENST00000440867/Upstream/1444; ENST00000305097/Downstream/185103;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/380054, chr3-CpG: 120/Downstream/185223
Nearby gene
LOC102724289(+779) ;
Upstream sequence
CACTTCTTCCCTTCTAGGGTCACCTGCCTGGTTAAGGGTAGTCAGTCTGAACATTCATTCAGGATTTCAGTGTTCCAGCCTACTATCTCTGAGTTTCTTT
Downstream sequence
GCTCCCCCAGGTCTCAACCTCTGTAAGTCTTCTGTTTTCTTCCTCTTTACCTTAGAGTCTTTTCCAATGATACAGTTAGACATATTAACTTTATTTTTTA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate