Basic Information
VIS ID
TVIS42000217
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
151421
Orient
+
Integrated sequence
GTATATCTAGGATAGCCGCACCTACACAAATGAGACACAGACACAGGTCGTGAGGATTTAGGCAACGCAGGCTTGTCTTTATAGTTACAAACATGGGAGC| |GTGCACCTGGAAGATGCAGCTGGGGTAGATCTTTACATCTTTACAGGGCGCAGCGGCCGCCAGACACTGAAGGGCAGAGTTCACGGCGGGCACCTCCCAG
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
172176806/172459016 (Hg38)
End
172176806/172459016 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1352257; hsa-mir-1224/Downstream/2910524;
Nearest TSS
ENST00000440867/Upstream/10560; ENST00000366254/Downstream/64294;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/8940, chr3-CpG: 39/Downstream/251610
Upstream sequence
aggaagtggtacgtaacaccccactccttaaatgtgggctgcacgttgtgactttcttttgaaaagtagagcatggaaagggaggtgggggaaaggaata
Downstream sequence
taaagttatagctatgatattttactctgattagatggaaaatcactggaagatttaaggcagaagagtgacatgatctaatacttgtaatccgatcact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate