VISDB Viral Integration Site DataBase

VIS ID

TVIS42000218

Fusion event

EBV-PARL integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

112903

Orient

-

Integrated sequence

CAATTCACGCCAGTAATTTATATTGCCCAATGCTTCGAGCATACTGCCGCCACTATGGCCCCAGGCCCGTGTTTGTAGCTTCTGATGAATCATTACCCAT| |GTTCGGTGCGAGCCCTGCCCTTCACACCCCAGTCCAGGTCCAGATGTGCCTACTACCAGAGCTACGCGACACGTTACAGCGCCTGCTGCCACCACCCAAT

Chromosome

chr3

Cytoband

q27.1

Reference genome

Start

End

183555398/183837610 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1301-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-25-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-4686 ; hsa-mir-8485 ; hsa-mir-3925-5p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-3152-5p ; hsa-mir-6836-3p ; hsa-mir-452-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-3912-3p

Nearest miRNA

hsa-let-7g/Upstream/7322459; hsa-mir-1224/Downstream/49190;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/11594, chr3-CpG: 37/Downstream/47034

Upstream sequence

atatatataaatatatataatttataaatattataaattattataaaaaatttataaatattttaccacaataaaaaataaatcaataaataTGCACCTC

Downstream sequence

gctgagtgaggaacctggacgtctactcctacacccagcagtaacgagtcacggcaccccctctcctcatcagaacagtgtcagaggaagaccactgaaa