VISDB Viral Integration Site DataBase

VIS ID

TVIS42000220

Fusion event

EBV-LPP integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

156420

Orient

+

Integrated sequence

TGCGGCGGCGGTCTCTGGATCGTGATAGCGTCTTCTGCGTAGGCCTGGAAAACGGTCCCTGGCTGCCTGCAATGCTCTGCTGGCCACTGAGGGTCCGGCC| |GCCCTCTGAGCTGCTCTCTTTTGCTCCTGGTTTTGCTCATGCAGCGCTAACATGATGGCTTGTAATTCTGTCTTACTAATGGGATTAATGCCTGGACCCT

Chromosome

chr3

Cytoband

q28

Reference genome

Start

End

188448338/188730550 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-142-3p ; hsa-mir-758-5p ; hsa-mir-3190-3p ; hsa-mir-548aw ; hsa-mir-6079 ; hsa-mir-4762-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4452 ; hsa-mir-376a-5p ; hsa-mir-3192-3p ; hsa-mir-4684-3p ; hsa-mir-656-5p ; hsa-mir-4502 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-491-3p ; hsa-mir-7156-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4729 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-4752 ; hsa-mir-620 ; hsa-mir-3911 ; hsa-mir-1270 ; hsa-mir-7847-3p ; hsa-mir-4697-3p ; hsa-mir-4683 ; hsa-mir-4289 ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-511-3p ; hsa-mir-6782-5p ; hsa-mir-3936 ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-3174 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-627-3p ; hsa-mir-942-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6726-3p ; hsa-mir-4294 ; hsa-mir-130b-5p ; hsa-mir-6812-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-15a-3p ; hsa-mir-6888-5p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-1265 ; hsa-mir-191-5p ; hsa-mir-2392 ; hsa-mir-4327 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4740-3p ; hsa-mir-4742-5p ; hsa-mir-5093 ; hsa-mir-5186 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-7846-3p ; hsa-mir-1827 ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-2052 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4666a-3p ; hsa-mir-4709-3p ; hsa-mir-4722-5p ; hsa-mir-485-5p ; hsa-mir-665 ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7849-3p ; hsa-mir-940

Nearest miRNA

hsa-let-7g/Upstream/41684; hsa-mir-3137/Downstream/1099372;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/575984, chr3-CpG: 25/Downstream/216936

Upstream sequence

ttgttccagtaccatttgttgaaaacactatatttgcttcattgtattgcttttgcttttttgtcaaaggtcagttgactatatagatctatttcttggc

Downstream sequence

ATTTAACCTTTGTTCAAATACATTAAGCCCTTTCTTCCCTTTGTCATTCTCAAACTGGATCGACATGATAGGAGGAGAAATTTTATCAACTAAAAGGGGT