VISDB Viral Integration Site DataBase

VIS ID

TVIS42000222

Fusion event

EBV-LRPAP1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

75578

Orient

+

Integrated sequence

GCCAAGGACCCCCGCGTCACTGTGGGGGCTGTAGAAGGAGGTGAGGTGGTGCTTGTGAAGGTAAACAAGCTGACAGAAGCGCCGGTACTTGTTAAGGAAC| |ACGGTCTGGTCACTAAAGTTGGTCAGGCTGACGTCCACCCCACCCCGGCGCCACCTGCAGGGCTTCACTAGAATACCCTGCATGGCCAGGCCCGACCTGC

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

3510084/3508357 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-197-3p ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-138-2-3p ; hsa-mir-3691-3p ; hsa-mir-3174 ; hsa-mir-140-3p ; hsa-mir-6501-3p ; hsa-mir-95-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-4668-3p ; hsa-mir-3609 ; hsa-mir-7977 ; hsa-mir-6721-5p ; hsa-mir-383-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-4716-5p ; hsa-mir-6767-3p ; hsa-mir-4781-3p ; hsa-mir-767-5p ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-7153-3p ; hsa-mir-649 ; hsa-mir-1184 ; hsa-mir-3613-3p ; hsa-mir-371b-5p ; hsa-mir-373-5p ; hsa-mir-4293 ; hsa-mir-4325 ; hsa-mir-4418 ; hsa-mir-4461 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-5186 ; hsa-mir-616-5p ; hsa-mir-7156-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-4800/Upstream/1258201; hsa-mir-12113/Downstream/2414918;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/4890, chr4-CpG: 70/Downstream/850

Upstream sequence

CATGGTTTGAGTAATGACCGTGGTTTCGATCTCTGTGCCGAGTACCATCCAGAGCCGGGATGTGAGGGGTTAAGATGCTTTCAGTAACTGGGATACAGAT

Downstream sequence

aaatggcaggcatagatggcctcacccatcacatctctatgaaacaaataatgccaatcctatacaaactatggcagaacttgtttcaggaggcccactt