Basic Information
VIS ID
TVIS42000223
Fusion event
EBV-STK32B integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
94262
Orient
+
Integrated sequence
GACCCCCGGGGGTGGTGATGTAGCTATACTTTCTTCCCTGTTTGCTTTATGGAATGCCCTCCCAACATCTGGTAGACAATCCTCCAGGGACGATTTAATC| |CCAGCCGCCGTGCAGGCCTTAACCACGGCCCACAACTTATGTCTGGGTGTTATTCCAGGTGAGACCTCACACAAGGACACACCCGAGTCATTGCTCCGGG
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
5341986/5340259 (Hg38)
End
5341986/5340259 (Hg38)
Orient
+
Location type
Intronic
Target gene
STK32B
Nearest miRNA
hsa-mir-4800/Upstream/3090103; hsa-mir-12113/Downstream/583016;
Nearest TSS
ENST00000502981/Upstream/126017; ENST00000511959/Downstream/92027;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/288102, chr4-CpG: 18/Downstream/228149
Upstream sequence
ttccccaaacctggtagtgagtcaataaatattttgttgaatgacttaatTACAAAGTCCAGCCACAACCTAAGAAGATGGCTTGACTTGATGTTTTAAG
Downstream sequence
CAGCACCAGTGGGAGCTTCAAGGAGGGGTGCCCAGCCAGCCTGAATTGGGGAGTGGGGCAGGGGCCGAGTTGGcaagtaaggcttcctctgccacagtcg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate