Basic Information
VIS ID
TVIS42000225
Fusion event
EBV-C1QTNF7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
60344
Orient
+
Integrated sequence
GACGCAGGGGCTCGCTGGTGTGGGCCCAGAGGGGGTGATCCGCGATGCCCCGGCTCTCCCTGAGGGCCGGCACCAGGAGGCGCCTTCTGAGGGTGGCCGT| |GTCGGCCGTGGCCAGGGCCCACCTGGCGGCGGCGTCCCGGCACACATCCTGGATGCCCTCCACGACGCTCTTTAGCGTCTGGAGGTCCGTGGAGTAGTGG
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
15357721/15356097 (Hg38)
End
15357721/15356097 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
C1QTNF7
Nearest miRNA
hsa-mir-12113/Upstream/1728140; hsa-mir-12115/Downstream/5172178;
Nearest TSS
ENST00000502981/Upstream/16090; ENST00000382383/Downstream/18452;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/350960, chr4-CpG: 145/Downstream/298644
Upstream sequence
TCCTCCCCCTCttttttttttttttttttttatttgagacggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaaac
Downstream sequence
GTTTCttttttttattattatattttaagttctaggatacatgtacagaacatgcaggtttgttacataggtatacacgtgccatggtggtttgctgcac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate