VISDB Viral Integration Site DataBase

VIS ID

TVIS42000228

Fusion event

EBV-PRR27 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

130347

Orient

+

Integrated sequence

AACTTGTCCCCGTTGATGGACAGGGCCACATAAGACAAGTGACAGCGCAGCTGATAAAAGACATAGCTGTGTGGCCGCGTGTTGGGCAGCATGGTGCCAA| |TATAGTAGAAGAGCTGCTTCTCAAGGGGGGCACTAAGCATGCAGGCAGGGGAATTCAGGCCGCTAATGACTCCGGGATGGACCTTAGATGCATCCACTTG

Chromosome

chr4

Cytoband

q13.3

Reference genome

Start

End

71020510/70154793 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1247-3p ; hsa-mir-3160-3p ; hsa-mir-3190-3p ; hsa-mir-3689d ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-495-5p ; hsa-mir-558 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-8077

Nearest miRNA

hsa-mir-12113/Upstream/3877865; hsa-mir-1243/Downstream/6418775;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/1804590, chr4-CpG: 55/Downstream/533344

Upstream sequence

atatggcaccattcctcggggtgatcagccagttacctggtggcaggttgattatattggacctcttctatcctggaaagggcaaggtttctccatatcc

Downstream sequence

ATTTATGTACAGACATTAGGGATACTTGATGGAATAGAAGTAAATGCACATCATACCTTtagtggactgtaacgtaatatagtgtaatgcaatggccttt