Basic Information
VIS ID
TVIS42000230
Fusion event
EBV-STPG2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84425
Orient
+
Integrated sequence
ACGGCAGGCCCGCGGTGTTTGACCGAAAGTCAGATGCAAAATCAACCAAAAAATGCAGGGCCATAGTAACTGACTTTAGTGTAATCAAGGCCATTGAAGA| |GGAACACAGAAAGAAGAAGGCAGCCAGAACAGAGCAGCCAAGAGCCACGCCTGAATCCCAGGCCCCCACAGTGGTCCTCCAGCGACCACCCACGCAGCAA
Host Sequence
Chromosome
chr4
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
98647539/97726388 (Hg38)
End
98647539/97726388 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
STPG2
Nearest miRNA
hsa-mir-12113/Upstream/10425805; hsa-mir-1243/Downstream/1270999;
Nearest TSS
ENST00000502981/Upstream/359462; ENST00000503667/Downstream/166815;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2176545, chr4-CpG: 19/Downstream/417063
Upstream sequence
AGTGAGAGGAAACTTGAGACTGAGGTTGTAATGGGAGTGTATCCATGTAGTCACTCTAAGTCACAACTTAGAGTAAAATGAGGTTTCTATGATGTTTACT
Downstream sequence
gtacttaatgccactgtgtacactttaaaatgattaagatggtaaattttctcttacgtgtattttgctacagttTTTAAAAAGATAAAATTCCAGATAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate