VISDB Viral Integration Site DataBase

VIS ID

TVIS42000234

Fusion event

EBV-SPATA5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

97630

Orient

+

Integrated sequence

GGAGATGACGGAGATGAAGGAGGTGATGGAGATGAGGGTGAGGAAGGGCAGGAGTGATGTAACTTGTTAGGAGACGCCCTCAATCGTATTAAAAGCCGTG| |TATTCCCCCGCACTAAAGAATAAATCCCCAGTAGACATCATGCGTGCTGTTGGTGTATTTCTGGCCATCTGTCTTGTCACCATTTTCGTCCTCCCAACAT

Chromosome

chr4

Cytoband

q28.1

Reference genome

Start

End

124102222/123181067 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-345-3p ; hsa-mir-186-5p ; hsa-mir-489-3p ; hsa-mir-670-5p ; hsa-mir-4732-3p ; hsa-mir-6719-3p ; hsa-mir-8066 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1257 ; hsa-mir-3913-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-383-3p ; hsa-mir-6748-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6811-5p ; hsa-mir-6516-5p ; hsa-mir-4722-5p ; hsa-mir-6511b-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-2276-3p ; hsa-mir-3121-5p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6827-3p ; hsa-mir-6736-3p ; hsa-mir-340-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-4284 ; hsa-mir-3123 ; hsa-mir-3151-3p ; hsa-mir-3192-3p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-4762-3p

Nearest miRNA

hsa-mir-12113/Upstream/8524213; hsa-mir-1305/Downstream/2326192;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/257784, chr4-CpG: 179/Downstream/216085

Upstream sequence

GCTGTGGGGGGAATGGGCCTGGGCCAGGGTCAGGTGGGTCTTCTGCTTGCTTCTGCCTCTGCCGAGTCTATGAGTGTGGGGCTTTTGGCGGAGCAAGGGC

Downstream sequence

tccgcctcccaggttcacgccattcttctgcctcagcctcccaagtaggtgggactacaggcacccgccaccgcgcctggctaattttttgtatttttag