Basic Information
VIS ID
TVIS42000235
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
63680
Orient
-
Integrated sequence
TGGTCAGCAAGGCCATCCCTCGCAGCACCGTCAAGGTGACGGTGCCCCAGGAGGCCTTTGTGGATCTGGACGCGTGGCTCTCCGGCGGCGCCGGGGGTGG| |CGGTGGAGTATGCTTCGTCGGGGGGCTGGGCCTGCAGCCGTGCCCCGCCGATGCGCGCCTCTATGTCGCTCTGACCTATGAGGAAGCCGGGCCGCGGTTT
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
129644094/128722939 (Hg38)
End
129644094/128722939 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/3215632; hsa-mir-1305/Downstream/14620521;
Nearest TSS
ENST00000502981/Upstream/121532; ENST00000626286/Downstream/45289;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/434314, chr4-CpG: 34/Downstream/86552
Upstream sequence
GCTCAATAGTTTAAGGGAGAAAAACATACGTTTCTGATTTTGTATCATCAGTACATACAAATTTTAATTTTTTAAAACCCAAAGTAATTTCTGAATAATC
Downstream sequence
TTAGACCttgtggagaacctaaacctatctattccagtgttcttagcttaggtaagaaaacacaggtcctgggaacttaccagtgagaaaactaagatca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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