Basic Information
VIS ID
TVIS42000240
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
47901
Orient
+
Integrated sequence
GTGGAGAGGCCCGGGGGCCTTGTCCGCTGGGCCAGGTCACAGACCAGCCCCTCATCCCTGACCCTCGCGCCCCATCTTGGCCCGTCCCTCTTGTCCCTTT| |CAGTGGTCACCGGTGGTGGGTGTGGAGCCGTGGCCTTTTGCAACGCCTTTTTCCTAGCTTATTTTTTGGTTGTGCGGTCTGTTTTCCCCGCGTTTTCCGA
Host Sequence
Chromosome
chr4
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
162258849/161337697 (Hg38)
End
162258849/161337697 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2208803; hsa-mir-1305/Downstream/1755877;
Nearest TSS
ENST00000502981/Upstream/798443; ENST00000508189/Downstream/41256;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2233714, chr4-CpG: 71/Downstream/1828612
Upstream sequence
gaacactactcagccatataaaaagcataaaattttgtctttggcagtaacatggatagaagtggagaccattttcctaagtgaaataactcagaaactt
Downstream sequence
AGCAGAGTGCTCAAGGTATGAGGGATAAGACCCCAATATTATACGTGTCTAGAAGAGCAAAAAACAAGGTACACATTTCATTTACGAACTAACAGGAATG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate