VISDB Viral Integration Site DataBase

VIS ID

TVIS42000242

Fusion event

EBV-CCDC127 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

144105

Orient

-

Integrated sequence

CCTACCCCCCCCTCCCTTACGGTTGCCTGAGCCCATCCCCCACCCCAGCACCCCGGGGTGACGTGGCACCCCGCGTGCCTTACTGACTTGTCACCTTTGC| |ACATTTGGTCAGCTGACCGATGCTCGCCACTTCCTGGGTCATGACCTGGCCTGTGCCTTGTCCCATGGACAATGTCCCTCCAGCGTGGTGGCTGCCTTTG

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

209033/208918 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-8055 ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-190a-3p ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-496 ; hsa-mir-4317 ; hsa-mir-382-3p ; hsa-mir-3074-3p ; hsa-mir-5011-5p ; hsa-mir-5197-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-7856-5p ; hsa-mir-4503 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6734-3p ; hsa-mir-3667-3p ; hsa-mir-6507-3p ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3692-5p ; hsa-mir-4316 ; hsa-mir-4327 ; hsa-mir-455-3p ; hsa-mir-4719 ; hsa-mir-585-5p ; hsa-mir-6071 ; hsa-mir-6087 ; hsa-mir-621 ; hsa-mir-645 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6728-3p ; hsa-mir-6765-5p ; hsa-mir-7151-5p ; hsa-mir-93-3p

Nearest miRNA

hsa-mir-10397/Downstream/853978;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/13710, chr5-CpG: 24/Downstream/1931

Upstream sequence

gtaaacaatattcttggtgtagattttttggtatttatcttgcttgatgctgttgtgtgtccttaatttttaaaattactctgccattatcgctacaaat

Downstream sequence

ccaagacctggatgagagatggcagtatcatctgacaaggacttcagagcagctgccatgacagagagcctaagaaaataaacacaagacgtaaagaaga