Basic Information
VIS ID
TVIS42000243
Fusion event
EBV-CTD-2194D22.4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111275
Orient
+
Integrated sequence
TCAGGTGTTTGTGCTGAAAGGTGAAGTAATCAATGACAGTCACCTTCCCCAAAAAGGCCTGGGTCTCTCGAGGGGGTTCTGGGGAGACACTCAACTCGCC| |ACTGCTGGAGGAGTTCGTCGGGCTCAACTCCGCAGCCATATTCACATCCATGTTCCTCAAATGGCTCGAGGGCCTGTCGCAGCTCGTCTCTGGCCTCAAG
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1889719/1889605 (Hg38)
End
1889719/1889605 (Hg38)
Orient
+
Location type
Intronic
Target gene
CTD-2194D22.4
Nearest miRNA
hsa-mir-4277/Upstream/180737; hsa-mir-10397/Downstream/4938248;
Nearest TSS
ENST00000502646/Upstream/2273; ENST00000513419/Downstream/44258;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1976, chr5-CpG: 110/Downstream/41035
Upstream sequence
atgcatatttctgcagctggcttgaatttctcttcaaacaatgggtttttctttagtattgcatgatcaggttgcaaattttctaaacttttttgctctg
Downstream sequence
CACTGCCAGGCCTGACCTTACCCTGATTTCATGACTCAAGCGACCATGGGCATCTGCAGCTGCCCTCTGCCCCTCAGCCCTTGACCTTGAGGGCAGGGGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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