Basic Information
VIS ID
TVIS42000245
Fusion event
EBV-LOC105374657 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
137265
Orient
+
Integrated sequence
AGGCAGCTCAGGCGCAGCCTCCACCCCCGGGCACACAGGCCCCCGAAGCCCACTGTGTGGCCGAGTCCACGATCCCTGAGGCGGGAGCAGCCGGGAACTC| |TGGACCCCGGGAGGACACCAACCCTCAGCAGCCCACCACCGAGGGCCACCACCGCGGAAAGAAACTGGTGCAGGCCTCTGCGTCCGGAGTGGCTCAGTCT
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12845674/12845562 (Hg38)
End
12845674/12845562 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374657
Nearest miRNA
hsa-mir-10397/Upstream/2367417; hsa-mir-103a-1/Downstream/1980367;
Nearest TSS
ENST00000502646/Upstream/270705; ENST00000513283/Downstream/187324;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/50027, chr5-CpG: 26/Downstream/964455
Upstream sequence
AGATACTAGCACACGTGAAATGAAAGAAAAAAGATAGATCGGTGACTTGAAGTTTGATGGTTTATTGGAAAATCTCAGTGAAACTTAAAGATTTAAGGGA
Downstream sequence
acatttcaactagattgtctgaaagaaagtcctagaggacaagggagtgttgaccctgtgagtcaagaaaagccaggatggcggcataaagaggagggga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate