Basic Information
VIS ID
TVIS42000246
Fusion event
EBV-LOC105374678 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
94207
Orient
+
Integrated sequence
ATGTCACTCTTTCTGGAGGAAATATTGCAGTCAAAATTCGCGATGCTATAAACCAGACCCCCGGGGGTGGTGATGTAGCTATACTTTCTTCCCTGTTTGC| |TTTATGGAATGCCCTCCCAACATCTGGTAGACAATCCTCCAGGGACGATTTAATCCCAGCCGCCGTGCAGGCCTTAACCACGGCCCACAACTTATGTCTG
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
21020465/21020356 (Hg38)
End
21020465/21020356 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5E
Target gene
LOC105374678
Nearest miRNA
hsa-mir-10397/Upstream/3864364; hsa-mir-103a-1/Downstream/10915746;
Nearest TSS
ENST00000502646/Upstream/403951; ENST00000606105/Downstream/321019;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/714529, chr5-CpG: 38/Downstream/439004
Upstream sequence
gactttgggagactcttgggaaggcataattgtgttttgaaatgtgagaaagatgagattttggagggcaaaaggtggaatgatatggtctggctctgtg
Downstream sequence
ttaaattttctccattctctacttcttagaggtgaatactttttcattctagatgtaccaGAAATTAATTTTTAAGAAACAGTATATAGATATTGCCatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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