Basic Information
VIS ID
TVIS42000247
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
112875
Orient
-
Integrated sequence
GACAGGTGGGCTCACCCTCTGGTGGGCACAATTCACGCCAGTAATTTATATTGCCCAATGCTTCGAGCATACTGCCGCCACTATGGCCCCAGGCCCGTGT| |TTGTAGCTTCTGATGAATCATTACCCATGTTCGGTGCGAGCCCTGCCCTTCACACCCCAGTCCAGGTCCAGATGTGCCTACTACCAGAGCTACGCGACAC
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
30431124/30431017 (Hg38)
End
30431124/30431017 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/13275025; hsa-mir-103a-1/Downstream/1505085;
Nearest TSS
ENST00000502646/Upstream/1035036; ENST00000506396/Downstream/762733;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1502487, chr5-CpG: 37/Downstream/762828
Upstream sequence
ATTCTAAAGCTACACAAtgcagccatatggtccgagttcaaattctggctccaccatatcccaactgtatgatcttgggcaggttaatttatctctctgt
Downstream sequence
atatacatatatttttggctgtgttcatttctactttttttttcttggatctcaattatgcgtttgtgcctaggctacaccttttgagattgtcccatgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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