Basic Information
VIS ID
TVIS42000249
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
72929
Orient
+
Integrated sequence
CACAATAGCATGGCCTCTAGGTAGGGGGGTGATGACGCGAAAGCCCAGTTTTCCCGTGCATATGCAAAAGGGGAGCACATCTTCCATATTATCCGGGTCG| |GCGGGTGGACAAGCTGATTTGAAAAAATAGACTGGGTGGGCCCTGGACACTGGACCCAGGCGGCGCATGAGGCGCAGTACCTCACGCCGCACGGTCCGGC
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
44742241/44742139 (Hg38)
End
44742241/44742139 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6184578; hsa-mir-103a-1/Downstream/9209365;
Nearest TSS
ENST00000502646/Upstream/41331; ENST00000511712/Downstream/10810;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1138591, chr5-CpG: 69/Downstream/66806
Nearby gene
MRPS30-DT(+2189) ;
Upstream sequence
CTCAAGAAAACTTCCTCTCATGGAACTCAAGGAGCTTCCCCATGAGGCCTGCCCTCCTACCAACACCCTACCCAGTTCCCCAGTGGTTTTCTCCTGAGTC
Downstream sequence
aaataaaattgcttcaaaaatataagagaagagtgatattcctaaacaaatacatGTTTCTAACTCCTGTTAGACAAAATGGAAACCTAGAATTTGTTAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate