Basic Information
VIS ID
TVIS42000250
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
2008
Orient
+
Integrated sequence
TGAGAACCTGCTGCTAGTGGCGCTGCGTGGCACCAACAACGATCCCAGGCCTCAGCGTCAGGAGAGGGCCAGAGAACTGGCCCTCGTTGGCATTCTACTA| |GGAAACGGCGAGCAGGGTGAACACTTGGGCACGGAGAGTGCCCTGGAGGCCTCAGGCAACAACTATGTGTATGCCTACGGACCAGACTGGATGGCAAGGC
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
45699423/45699321 (Hg38)
End
45699423/45699321 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/7141760; hsa-mir-103a-1/Downstream/8252183;
Nearest TSS
ENST00000502646/Upstream/2823; ENST00000510987/Downstream/190895;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2913, chr5-CpG: 79/Downstream/4741452
Nearby gene
HCN1(-3203) ;
Upstream sequence
TAAAAATGAGCAGGTCAACAAGGTCCTAATGGGTTTACTACAGTTTAGTCAGACTCTCAGTTTAACATTTACAGAAATCCAATTTGAAAATTTATTCAAT
Downstream sequence
TAAGACATTTTGACCCTCTTAGTAGGACAGAGTAATATGTTACAAACATATTACACGTGTAAGGAAATAAAATAAGAACATCTGTTGAAGAAGGCAGTGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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