Basic Information
VIS ID
TVIS42000252
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48690
Orient
-
Integrated sequence
GTGCCTGCCGCGGGTCCCCGGGCCTACAAGTGTTTCAGATCCCACGCCTCCAGACCGGTGTCTGGCCCGGATTACCCTCCCTTGGCCGTGTTTTGCATGG| |ACTGCGGTTACTGCTTGAACTTTGGAAAGCAGACAGGTGTAGGAGGCAGGCTCAATTCCTTTAGACCCACTCTCCAGTTTTATCCCCGTGACCAGAAGGA
Host Sequence
Chromosome
chr5
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
63095024/63799197 (Hg38)
End
63095024/63799197 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/4095494; hsa-mir-103a-1/Downstream/8370270;
Nearest TSS
ENST00000502646/Upstream/1197968; ENST00000504296/Downstream/162936;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1385968, chr5-CpG: 32/Downstream/160020
Upstream sequence
attttcctactgaatatgtttgttctctttccttcagaggtttacaaaaagttctttgtgcattttattggaacaatttagcaaatactctaagctaagc
Downstream sequence
cttggttttatcttctgcaaaattatgttaagaatgagaagacattagattcttgaggtttaatatgtgatatggtttggctctgtgtcctgacccaaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate