Basic Information
VIS ID
TVIS42000253
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
163688
Orient
+
Integrated sequence
GGCTCTGCTTCTCCAGCAGCTCCACCAGCTTGCCCACCCGTCGGACGCGCAGCGCCTGCGCCAGCCCGGTGTACAGCGCCTCGTGCATGCAGCGGCTGAG| |GTCCGAGTTGTAAAACTGGCGGAGCTGGGGCACGCCCTCTGGGAACACCTCCTTGTCGTAGAGCGGGACCCTAACGCTCGCAGACTGCCCCACCGCTACC
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67771795/68475968 (Hg38)
End
67771795/68475968 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/8772265; hsa-mir-103a-1/Downstream/3693499;
Nearest TSS
ENST00000502646/Upstream/41487; ENST00000515504/Downstream/47910;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/187345, chr5-CpG: 62/Downstream/617882
Nearby gene
LOC105379012(+1499) ;
Upstream sequence
TTGCTTTAGGAGTCCTAGATGCTTTACACACACATTGTGTATATATAAAAAAATTACTAATTACACATTATGAATATGTATTTATACATACATATGATTT
Downstream sequence
AATTATTAGTAACAAGGTAATAAGAACCCAGAATTGGCCATTCAAAACAAAATCTCAGAACTTGATGCTAATCTACATGTAGCCCACCCCACACCTGTGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate