VISDB Viral Integration Site DataBase

VIS ID

TVIS42000254

Fusion event

EBV-MRPS27 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

65493

Orient

-

Integrated sequence

GCCGACACGCAGGGGGATGAACTCCTGCTGGCCCTCCCTCGACTCTCAGTCACCCTACCTGGAGAGGGGGCAGTCGGTGATGGATTCTCGCTAGCCCGCC| |TCAGAGATGCCACCCAGTGTGCCACCTTTGTGGTGGCCTGCTCCATTCTTCAGGGATCCCCCACTTATGATTCCAGGGATATGGCCTCCATGGGCCTCGG

Chromosome

chr5

Cytoband

q13.2

Reference genome

Start

End

71601635/72305808 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-155-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-4654 ; hsa-mir-4769-5p ; hsa-mir-6778-5p ; hsa-mir-3151-3p ; hsa-mir-629-3p ; hsa-mir-6818-5p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-188-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-198 ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-6716-5p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-496 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1825 ; hsa-mir-4267 ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-299-3p ; hsa-mir-4733-5p ; hsa-mir-6858-3p ; hsa-mir-576-3p ; hsa-mir-3154 ; hsa-mir-4428 ; hsa-mir-4646-3p ; hsa-mir-3679-3p ; hsa-mir-6749-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-642a-5p ; hsa-mir-2355-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5193 ; hsa-mir-6832-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6793-3p ; hsa-mir-2114-5p

Nearest miRNA

hsa-mir-10397/Upstream/136268; hsa-mir-103a-1/Downstream/572783;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/196767, chr5-CpG: 66/Downstream/2181

Upstream sequence

gacccttgttcacttgtttatctgctgaccttccctccactattgtcctatgaccctgccgaatccccctctgcaagaaacacccaagaatgatcaataa

Downstream sequence

CTGTTCACAGTGGATCCTATTCTGTTAACTAGTAAATGTTGATAACTTTTACCCTGTACCTCCCCAACAAATCAGCAAGTTAGTGGAGGAATTCCAGAGA