VISDB Viral Integration Site DataBase

VIS ID

TVIS42000257

Fusion event

EBV-GIN1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

106388

Orient

+

Integrated sequence

ATCAACAGGTGGGGGTTGTTGGTCCCGCCCATCATCCCCCGAGCAGCTTTGGCAGACCACCTGTGCTGGAAAGAGAGGCTGGAAGATGAGGCCCTGCTCA| |TCCTCCACCCTGGCGGCGGACAAGAGTCTGCGGTCTCGGGTTCTAAATGAAAGGTCAAATAGGTCCTTCTCGGCGGCATCGGCGAGCATAGCAATGAGCC

Chromosome

chr5

Cytoband

q21.1

Reference genome

Start

End

102435541/103099837 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6836-3p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-7110-3p ; hsa-mir-6817-3p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-4495 ; hsa-mir-379-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac

Nearest miRNA

hsa-mir-10397/Upstream/2283272; hsa-mir-103a-1/Downstream/7413992;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/233629, chr5-CpG: 33/Downstream/20012

Upstream sequence

accgaatccagcagcacatcaaaaagcttatccaccacgatcaagtggcttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaatgta

Downstream sequence

cattagaaacatctgtatttttattcaactatacaataaacctcccacattgtgtattatgttataatatttagcagtgttttctgcatcagtatttgct